Accurate energy demand forecasting is essential for the reliable operation and planning of modern sustainable energy systems. Spatial-temporal graph neural networks (STGNNs) have recently achieved strong performance in point forecasting by jointly modeling temporal dynamics and relational dependencies across interconnected energy nodes. However, in real-world energy systems, accurate point forecasts alone are insufficient, as operators also require reliable uncertainty estimates to support risk-aware decision-making, grid stability, and operational planning under uncertainty. Conformal prediction provides a principled and model-agnostic framework for uncertainty quantification with statistical coverage guarantees, making it particularly attractive for safety-critical energy applications. However, existing conformal prediction approaches often fail to fully capture the complex spatial-temporal structure of energy systems. To address these limitations, we propose STOIC (Spatial-Temporal Graph Conformal Prediction with In-Context Learning), a novel framework that integrates graph-based forecasting with the zero-shot calibration capabilities of tabular foundation models. STOIC first generates point forecasts using an STGNN and subsequently reformulates spatial-temporal residuals into a tabular representation suitable for in-context learning. Leveraging a tabular foundation model, STOIC calibrates prediction intervals without task-specific retraining, effectively capturing both sequential and relational dependencies. We evaluate STOIC on five diverse benchmarks, including synthetic simulations as well as real-world electricity and district heating networks. Across all datasets, STOIC consistently outperforms existing conformal prediction baselines, delivering more reliable and robust uncertainty estimates for complex graph-structured energy time series.

Uncertainty quantification (UQ) in scientific machine learning is increasingly critical as neural networks are widely adopted to tackle complex problems across diverse scientific disciplines. For physics-informed neural networks (PINNs), a prominent model in scientific machine learning, uncertainty is typically quantified using Bayesian or dropout methods. However, both approaches suffer from a fundamental limitation: the prior distribution or dropout rate required to construct honest confidence sets cannot be determined without additional information. In this paper, we propose a novel method within the framework of extended fiducial inference (EFI) to provide rigorous uncertainty quantification for PINNs. The proposed method leverages a narrow-neck hyper-network to learn the parameters of the PINN and quantify their uncertainty based on imputed random errors in the observations. This approach overcomes the limitations of Bayesian and dropout methods, enabling the construction of honest confidence sets based solely on observed data. This advancement represents a significant breakthrough for PINNs, greatly enhancing their reliability, interpretability, and applicability to real-world scientific and engineering challenges. Moreover, it establishes a new theoretical framework for EFI, extending its application to large-scale models, eliminating the need for sparse hyper-networks, and significantly improving the automaticity and robustness of statistical inference.

We address this need by presenting a novel approach based on conformal prediction techniques to create a'confidence mask' capable of reliably and intuitively communicating where the generated image can be trusted. Our method is adaptable to any black-box generative model, including those locked behind an opaque API, requires only easily attainable data for calibration, and is highly customizable via the choice of a local image similarity metric. We prove strong theoretical guarantees for our method that span fidelity error control (according to our local image similarity metric), reconstruction quality, and robustness in the face of data leakage. Finally, we empirically evaluate these results and establish our method's solid performance.

Physics-Informed Machine Learning (PIML) has successfully integrated mechanistic understanding into machine learning, particularly in domains governed by well-known physical laws. This success has motivated efforts to apply PIML to biology, a field rich in dynamical systems but shaped by different constraints. Biological modeling, however, presents unique challenges: multi-faceted and uncertain prior knowledge, heterogeneous and noisy data, partial observability, and complex, high-dimensional networks. In this position paper, we argue that these challenges should not be seen as obstacles to PIML, but as catalysts for its evolution. We propose Biology-Informed Machine Learning (BIML): a principled extension of PIML that retains its structural grounding while adapting to the practical realities of biology. Rather than replacing PIML, BIML retools its methods to operate under softer, probabilistic forms of prior knowledge. We outline four foundational pillars as a roadmap for this transition: uncertainty quantification, contextualization, constrained latent structure inference, and scalability. Foundation Models and Large Language Models will be key enablers, bridging human expertise with computational modeling. We conclude with concrete recommendations to build the BIML ecosystem and channel PIML-inspired innovation toward challenges of high scientific and societal relevance.

Existing approaches either neglect dependencies, leading to overly conservative predictions, or rely solely on data-driven estimations, failing to capture the rich topological structure of the network. To address these challenges, we propose Spatio-Temporal Adaptive Conformal Inference (STACI), a novel framework that integrates network topology and temporal dynamics into the conformal prediction framework. STACIintroduces a topology-aware nonconformity score that respects directional flow constraints and dynamically adjusts prediction sets to account for temporal distributional shifts. We provide theoretical guarantees on the validity of our approach and demonstrate its superior performance on both synthetic and real-world datasets. Our results show that STACIeffectively balances prediction efficiency and coverage, outperforming existing conformal prediction methods for stream networks.

Probabilistic weather forecasting is undergoing rapid transformation with artificial intelligence (AI). In traditional numerical weather prediction, computing power can limit how well ensemble forecasts approximate the unknown statistical distribution of future states. AI models facilitate larger ensembles and are trained with probabilistic considerations, ideally leading to better uncertainty quantification. Forecasts from these state-of-the-art models are often considered well-calibrated. However, here we show that the statistical coverage of such models, the ultimate measure of calibration, can struggle, especially on extreme events. To address this shortcoming, we employ conformal prediction, a class of statistical methods that mathematically guarantees coverage under no distributional assumptions, unlike previous post-processing techniques. We apply online conformal prediction to temperature and precipitation forecasts (including extremes) of three leading global weather models, GenCast, NeuralGCM, and AIFS-ENS, ensuring calibrated uncertainty at no expense to other probabilistic metrics. This post-processing method can be applied to any forecasting model.

Factor models are popular approaches for analyzing high-dimensional data to extract low-rank signals and estimate covariances. They decompose the covariance matrix as the sum of low-rank and diagonal components. A key issue is how to choose the latent dimension $k$, which is particularly challenging when the factor model only holds approximately and in low signal-to-noise scenarios. Bayesian overfitted factor models specify an upper bound on $k$ and rely on structured shrinkage priors to effectively remove extra components. Such approaches are popular and effective, but computationally expensive. We propose a much faster \texttt{EigenBayes} approach that provides valid uncertainty quantification, based on spectral estimation of latent factors and adaptive empirical Bayes calibration of key hyperparameters. The resulting posterior distribution factorizes across outcomes and is analytically tractable, bypassing Markov chain Monte Carlo. We show that \texttt{EigenBayes} adapts to the signal-to-noise ratio of each outcome and latent dimension, while shrinking superfluous latent components to zero. We establish favorable asymptotic properties and demonstrate strong empirical performance in numerical experiments and a genomics application, where EigenBayes outperforms state-of-the-art alternatives.

Low-Rank Adaptation (LoRA) offers a cost-effective solution for fine-tuning large language models (LLMs), but it often produces overconfident predictions in datascarce few-shot settings. To address this issue, several classical statistical learning approaches have been repurposed for scalable uncertainty-aware LoRA fine-tuning. However, these approaches neglect how input characteristics affect the predictive uncertainty estimates. To address this limitation, we propose Contextual Low-Rank Adaptation (C-LoRA) as a novel uncertainty-aware and parameter efficient finetuning approach, by developing new lightweight LoRA modules contextualized to each input data sample to dynamically adapt uncertainty estimates. Incorporating data-driven contexts into the parameter posteriors, C-LoRA mitigates overfitting, achieves well-calibrated uncertainties, and yields robust predictions.

Large language models (LLMs) show remarkable promise for democratizing automated reasoning by generating formal specifications. However, a fundamental tension exists: LLMs are probabilistic, while formal verification demands deterministic guarantees.

In this paper we investigate the efficacy of the score-based martingale posteriors (SMP) (Cui & Walker, 2025; Fong et al., 2023) in the context of modern and large-scale machine learning problems and its potential for meaningful uncertainty quantification. SMPs work with a stochastic gradient ascent-type recursion on the parameter space of stochastic models and construct a martingale on the parameter space. Under simple mathematical assumptions, the recursion can be built so that the parameters form a martingale sequence which possesses a limiting, in time, random variable, the latter of which can be simulated very quickly, in contrast to Monte Carlo-based methods such as Markov chain Monte Carlo. In this expository paper we explore the SMP for inferring the parameters of deep neural networks (DNNs) and, where feasible, compare our results to the state-of-the-art Monte Carlo methods aimed at inferring conventional Bayesian posteriors.